species:   Scscl
pid:       PID1533
parent:    Ssc-milR-9
paralog:   
locus:     NW_001820801.1:1973-2047
matures:   ['UAGCCGGGCUAUUUAGCAGGUU', 'UCCCUCUAAGAAGCCAGCGACCAGC']
srr:       SRR12527897
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram NW_001820801.1:1973-2047

1429 out of bounds
200 alignments
2 proper strand
1 stranded perfect matches

************************                            ***********************
UUGAGCCGAUAGUCCCUCUAAGAAGCCAGCGACCAGCCAAAGCUAGCCGGGCUAUUUAGCAGGUUAAGGUCUCGU
..(((((..(((.((..(((((.((((..((.(.(((....))).).)))))).)))))..))))).)).)))..
-------------------------------------------UAGCCGGGCUAUUUAGCAGGUU---------- l=22 a=0 c
------------UCCCUCUAAGAAGCCAGCGACCAGC-------------------------------------- l=25 a=0 c*
------------------------------------------------------UUUAGCAGGUUAAGGUCUCGU l=21 a=1 ma
--GAGCCGAUAGUCCCUCUAAGAA--------------------------------------------------- l=22 a=0 ma*

------------------------------------------------------UUUAGCAGGUUAAGGUCUCGU l=21 a=1 (ma)
-------------------------------------------------GGCUAUUUAGCAGGUUAAGGUCc--- l=23 a=1 

mb-01011
ax-1001011
ku-01
ss-100111001100
fn-101
